hfe_accurate_pipeline module

Script runs ACCURATE pipeline, converted from Denis’s Bash script.

Author: Denis Schenk, ARTORG Center for Biomedical Engineering Research, SITEM Insel, University of Bern Maintained by: Simone Poncioni, ARTORG Center for Biomedical Engineering Research, SITEM Insel, University of Bern Date: April 2021 Latest update: 16.11.2023

UPDATES: - Updated to run multiple simulations independently in parallel (POS)

hfe_accurate_pipeline.pipeline_hfe(cfg, folder_id, grayscale_filename)[source]

Executes the homogenized finite elements (HFE) pipeline for a given sample.

Parameters:

  • cfg – Configuration object containing all necessary settings.

  • folder_id (str) – Identifier for the folder containing the sample data.

  • grayscale_filename (str) – Filename of the grayscale image to be processed.

Returns:

A tuple containing the time record dictionary and the summary path.

Return type:

tuple