HR-pQCT Structured Hexahedral MeshingΒΆ
- cortical_sanity module
CorticalSanityCheckCorticalSanityCheck.KDT_nn()CorticalSanityCheck.ccw_angle()CorticalSanityCheck.center_of_mass()CorticalSanityCheck.check_min_thickness()CorticalSanityCheck.convertRadiansToDegrees()CorticalSanityCheck.correct_internal_point()CorticalSanityCheck.correct_intersection()CorticalSanityCheck.cortical_sanity_check()CorticalSanityCheck.draw_arrow()CorticalSanityCheck.get_normals()CorticalSanityCheck.hyp_min_thickness()CorticalSanityCheck.is_angle_bigger_bool()CorticalSanityCheck.is_internal_inside_external()CorticalSanityCheck.is_internal_radius_bigger_than_external()CorticalSanityCheck.lineseg_dists()CorticalSanityCheck.min_thickness_nearest_pairs()CorticalSanityCheck.nearest_pairs_arrs()CorticalSanityCheck.nearest_point()CorticalSanityCheck.offset_surface()CorticalSanityCheck.plot_contours()CorticalSanityCheck.plot_corrected_contours()CorticalSanityCheck.project_point_on_line()CorticalSanityCheck.push_contour()CorticalSanityCheck.resample_contour()CorticalSanityCheck.reset_numpy_index()CorticalSanityCheck.roll_index()CorticalSanityCheck.unit_vector()
- gmsh_mesh_builder module
MesherMesher.add_bspline_filling()Mesher.add_interslice_segments()Mesher.add_intersurface_planes()Mesher.add_slice_surfaces()Mesher.add_volume()Mesher.analyse_mesh_quality()Mesher.create_centre_splines()Mesher.get_barycenters()Mesher.get_centroids_dict()Mesher.get_elm_volume()Mesher.get_radius_longest_edge()Mesher.get_sort_coords()Mesher.get_trabecular_cortical_volume_mesh()Mesher.gmsh_add_points()Mesher.gmsh_geometry_formulation()Mesher.gmsh_get_bnds()Mesher.gmsh_get_elms()Mesher.gmsh_get_nodes()Mesher.gmsh_get_reference_point_coord()Mesher.gmsh_insert_bspline()Mesher.insert_bspline()Mesher.insert_closest_point()Mesher.insert_ellipse_arcs()Mesher.insert_intersection_line()Mesher.insert_lines()Mesher.insert_points()Mesher.insert_tensor_of_inertia()Mesher.intersection_point()Mesher.mesh_generate()Mesher.meshing_transfinite()Mesher.nodes2coords()Mesher.partition_lines()Mesher.polygon_tensor_of_inertia()Mesher.query_closest_idx()Mesher.shapely_line_polygon_intersection()Mesher.shift_point()Mesher.sort_bspline_cw()Mesher.sort_by_indexes()Mesher.sort_ccw()Mesher.sort_intersection_points()Mesher.split_dict_by_array_len()Mesher.trabecular_cortical_connection()Mesher.trabecular_planes_inertia()Mesher.trabecular_slices()
TrabecularVolume
- spline_volume module
OCC_volumeOCC_volume.calculate_outer_offset()OCC_volume.check_inner_offset()OCC_volume.check_orient()OCC_volume.classify_and_store_contours()OCC_volume.draw_contours()OCC_volume.err()OCC_volume.evaluate_bspline()OCC_volume.exec_thresholding()OCC_volume.get_binary_contour()OCC_volume.get_draw_contour()OCC_volume.get_line_sets()OCC_volume.guess()OCC_volume.input_sanity_check()OCC_volume.interpolate_vertical_lines_3d()OCC_volume.output_sanity_check()OCC_volume.pad_and_plot()OCC_volume.pad_image()OCC_volume.plot_mhd_slice()OCC_volume.plot_slice()OCC_volume.plot_slices_with_slider()OCC_volume.plotly_add_traces()OCC_volume.plotly_makefig()OCC_volume.process_slice()OCC_volume.sort_mahalanobis()OCC_volume.sort_surface()OCC_volume.sort_xy()OCC_volume.spline_neumann()OCC_volume.volume_splines()OCC_volume.volume_splines_optimized()
- spline_mesher module
- quad_refinement module
QuadRefinementQuadRefinement.add_curve_loop()QuadRefinement.add_surface_loop()QuadRefinement.center_of_mass()QuadRefinement.check_closed_surface_loop()QuadRefinement.close_outer_loop()QuadRefinement.common()QuadRefinement.create_connecting_surfaces()QuadRefinement.create_intersurface_connection()QuadRefinement.create_line_dict()QuadRefinement.create_square_grid()QuadRefinement.create_subvertices()QuadRefinement.create_surf_dict()QuadRefinement.exec_quad_refinement()QuadRefinement.flatten()QuadRefinement.get_adjacent_points()QuadRefinement.get_affine_transformation_matrix()QuadRefinement.get_common_lines()QuadRefinement.get_vertices_coords()QuadRefinement.get_vertices_minmax()QuadRefinement.gmsh_add_custom_lines()QuadRefinement.gmsh_add_line()QuadRefinement.gmsh_add_outer_connectivity()QuadRefinement.gmsh_add_plane_surface()QuadRefinement.gmsh_add_points()QuadRefinement.gmsh_add_surface()QuadRefinement.gmsh_add_surfaces()QuadRefinement.gmsh_add_surfs()QuadRefinement.gmsh_add_volume()QuadRefinement.gmsh_get_unique_surfaces()QuadRefinement.gmsh_make_transfinite()QuadRefinement.gmsh_skin_points()QuadRefinement.plot_vertices()QuadRefinement.quad_refinement()QuadRefinement.set_transformation_matrix()QuadRefinement.vertices_grid_cleanup()
create_initial_points()